Use this if you are using igraph from R
sample_motifs {igraph} | R Documentation |
Graph motifs are small connected subgraphs with a well-defined structure. These functions search a graph for various motifs.
sample_motifs(
graph,
size = 3,
cut.prob = rep(0, size),
sample.size = vcount(graph)/10,
sample = NULL
)
graph |
Graph object, the input graph. |
size |
The size of the motif, currently size 3 and 4 are supported in directed graphs and sizes 3-6 in undirected graphs. |
cut.prob |
Numeric vector giving the probabilities that the search
graph is cut at a certain level. Its length should be the same as the size
of the motif (the |
sample.size |
The number of vertices to use as a starting point for
finding motifs. Only used if the |
sample |
If not |
sample_motifs
estimates the total number of motifs of a given
size in a graph based on a sample.
A numeric scalar, an estimate for the total number of motifs in the graph.
Other graph motifs:
count_motifs()
,
motifs()
g <- barabasi.game(100)
motifs(g, 3)
count_motifs(g, 3)
sample_motifs(g, 3)